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Overview of Scarf

Installation
How to contribute
Frequently asked questions
Interactive tutorials on Colab

Basic pipelines

Workflow for scRNA-Seq data
Workflow for scATAC-Seq data

Multi-omics/Multimodal analysis

Transcriptome + Surface Proteome

Data integration tutorials

Integration through projection
Merging samples and datasets

Trajectory analysis tutorials

Pseudotime dynamics

Vignettes

Data organization in Scarf
Data import and export
Automated cell downsampling
Estimate cell-cycle phases
Exploring MNIST dataset

Useful links

Scarf paper in Nature Comm
Discussion page
Report bug

Reference manual

API
License
Index

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License

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By Parashar Dhapola

© Copyright 2023, Parashar Dhapola.