API

API#

DataStore classes#

BaseDataStore#

GraphDataStore#

MappingDatastore#

DataStore#

Assay classes#

Assay#

RNAassay#

ATACassay#

ADTassay#

MetaData#

Reader classes#

Cellranger H5 reader#

Cellranger directory (MTX) reader#

H5ad (Anndata) reader#

Loom reader#

Nabo H5 reader#

Writer classes#

Cellranger to Zarr#

H5ad (Anndata) to Zarr#

Nabo H5 to Zarr#

Loom to Zarr#

Zarr Merge#

Subset Zarr#