Scarf
0.7.8
Installation
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Scarf
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Scarf
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Installation
Requirements
Short version
Long version
Vignettes
Scarf’s basic workflow for scRNA-Seq
Workflow for scATAC-Seq data
Data import and export in Scarf
Cell subsampling using TopACeDo
Handling datasets with multiple modalities
Projection of cells across datasets
Merging datasets and partial training
Running notebooks live on Google Colab
FAQs
How does Scarf compare to Scanpy?
Should I use tSNE or UMAP?
Which clustering should we use, Paris or Leiden?
Can I use Scarf from R?
What does Scarf’s logo signify?
API
BaseDataStore
GraphDataStore
MappingDatastore
DataStore
Assay
RNAassay
ATACassay
ADTassay
MetaData
Readers
Writers
License
Index
Read the Docs
v: 0.7.8
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